Fat Extractor : A Fat Depot Analysis Tool


Information required for download

For any question, please connect to yangt.chla@gmail.com

System Requirement

  • Microsoft® Windows® 7 Enterprise, Ultimate, Professional, or Home Premium; Microsoft® Windows Vista® Enterprise, Business, Ultimate, or Home Premium (SP1 or later) ; or Microsoft® Windows® XP Professional or Home edition (SP2 or later)
  • 2 GB RAM
  • 300M free disk space
  • 1,280 x 1,024 true color video display adapter 128 MB or greater
  • 1,024 x 768 or up display resolution with true color
  • Matlab runtime environment


    This is the version for windows 64 bit with preinstalled Matlab 7.10. It has been tested in windows pro 7 64 bit.

    To install on Windows machines, follow the instructions below:
    1. Download the zip file
    2. Uncompress the zip file.
    3. The package contains the following files and folders:
    • FatExtractor.exe – the program
    • ./config – folder for saving configuration files
    • ./logo – folder for saving logo image
    • ./processed_data–folder for saving analyzed dataset
    • ./rules– folder for saving rule files
    • ./results– folder for saving result files
    • Download Agreement.txt– License information
    ./doc– folder for user manual pdf file
    4. Double-click on FatExtractor.exe to start FatExtractor.

If you can't run the program...

1. A Matlab runtime environment is required for matlab excutable program. You can download here and double click to install .

2.The windows version can not run on a Mac OS.

3.The win64 version may has problems in a 32 bit machine.

4.It may require a while to set the matlab environment when first run.

If you don't have a windows 64bit machine or fail to run the program. please connect to yangt.chla@gmail.com with your system information. We may make the dedicated version for you.

How to use the FatExtractor?

A pdf user manual (fatextractor_user_manual.pdf) is included in the download package(doc folder).

Test Data

A test data is availabe here.

Sample data for volume is availabe here.

Sample data for single slice is availabe here.